PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588575.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 256aa    MW: 28639.3 Da    PI: 10.1988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30150207359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+++WrKYGqK++kgs++pr+YY+C+s+ gC ++k+v+r+++dp++++itY++eHnh+
  XP_009588575.1 150 DKWAWRKYGQKPIKGSPYPRGYYKCSSSkGCLARKQVDRNRSDPNMFNITYTSEHNHP 207
                     99************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-30141209IPR003657WRKY domain
PROSITE profilePS5081132.673143209IPR003657WRKY domain
SuperFamilySSF1182901.7E-25147209IPR003657WRKY domain
SMARTSM007741.5E-34148208IPR003657WRKY domain
PfamPF031062.5E-25150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEADWDLHAV VRGCTAAVAT TTTTSSSSST ITTISSSTNI HQVDIFICFQ DYFEPKFDTT  60
NVVQELHNLY KPFVIGGLQD LSPHNQTLKQ QQKLHNHQLI TGLIQPKHFT TSKTSASRRT  120
SHTQMSPRIH KRKNKLKKVC QVPAEALSLD KWAWRKYGQK PIKGSPYPRG YYKCSSSKGC  180
LARKQVDRNR SDPNMFNITY TSEHNHPMPT HRSSLAGIAR QKPVNSKSSS AGETNKPTTS  240
SPACLSPVPE NQECNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-161472091677Probable WRKY transcription factor 4
2lex_A1e-161472091677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588575.10.0PREDICTED: WRKY transcription factor 22-like isoform X1
TrEMBLK4AZP91e-90K4AZP9_SOLLC; Uncharacterized protein
STRINGSolyc01g095100.2.13e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-54WRKY family protein